Why did The Atlantic publish this piece trying to link miRNAs and GMOs?

Editor’s note: republished with permission from The Biology Files.

By Emily Willingham

A study from a Chinese group led by Chen-Yu Zhang of Nanking University and published in Cell Research, has uncovered the fascinating result that when people eat rice, they can absorb microRNAs (miRNAs)–tiny sequences of RNA–from the rice into the blood. These rice-originating miRNAs turn up in blood and tissues of people who eat rice and…here’s the kicker…one type of rice miRNA interacts with human proteins that are responsible for removing LDL (“bad” cholesterol) from the blood (!). It’s the first report of plant miRNAs ending up in people by way of diet and the finding that at least one of them alters an important process in the body.

The implications could extend in many a direction, but not as far as writer Ari Levaux would like to take them in this remarkably confusing article published on the Atlantic Website. Before taking on the errors and the overstretch that are that piece, let’s look at something far more interesting: miRNAs themselves.

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Busting Bellatti’s Bad Broccoli Breath

Most of you are familiar with Monsanto the seed giant. All of you are familiar with the cruciferous vegetable, broccoli. Some of you may know that Monsanto released a variety of broccoli last year purported to be better for you, called “Beneforté.” One year later, an article by a newly-registered dietitian named Andy Bellatti appeared on Grist to bust Monsanto’s ‘better’ broccoli, which some of you may have noticed. But none of you who finish reading this post will believe that Bellatti “busted” the Beneforté broccoli at all. The only thing he busted was his own research, journalistic, and dietetic integrity.

Glusosino-What?

There has been considerable interest in investigating the composition of foods to determine what parts of them can contribute to our health. (And what detracts from it too.)  Broccoli and other cruciferous vegetables have garnered considerable attention for their effects on the development of cancer. Research has revealed an important class of compounds called Glucosinolates, particularly one known as Glucoraphanin. When this sulfur-containing compound is metabolized by a plant enzyme called Myrosinase, it becomes one of two different compounds: Sulforaphane and Sulforaphane Nitrile. These two Isothiocyanates have been found to have preventative effects against cancer, and Sulforaphane is by far the more potent of the two. And this year, an important paper found that even the precursor, Glucoraphanin, also has important effects.

I apologize for the dizzying array of chemical names. So let me see if I can make them easier to understand. Glucosinolates include many similar kinds of compounds, and Glucoraphanin at the top of the picture here is one example. It gets the Gluco- from having a glucose sugar molecule bonded to it, which is that ring on the right hand side. Isothiocyanates are another class of compounds, and the main example is Sulforaphane. You can distinguish them by that N=C=S group on the Sulforaphane above. There are many Glucosinolates and Isothiocyanates important for this topic, so rather than bring up so many names I’ll only talk about the groups (end in -ates) and the two specific ones I mentioned (Glucoraphanin and Sulforaphane both have -raph- in them).

How do they work? Well, there is a huge amount of research on this topic, and while I could send you on a journey through a google or PubMed search, there are a few clear things that we know.

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Worried about deliberate introduction of the German E. coli germ? Please read this.

From GMO Pundit.

(Updated 21-06-2011] Enough information is now emerging from the frantic work of the DNA sequencing teams and the crowdsourced intense detective work by bioinformatics experts (all mentioned in several previous posts at this site) to assemble a broad picture of how the German outbreak germ has evolved in recent years  in terms of changes to its overall chromosome structure.

The bottom line is this: the strain is roughly 75% conservative genes and 25% radical genes. It’s the newly arrived radicals that do the damage.

Kat Holt has presented in very visual terms her analysis of all the DNA decoding made public by several life-science workers and various corporations in Germany, USA, China, France and Britain. She has just made this available at backpathgenomics blog. Her latest work summarises DNA decoding data obtained on four different bacterial strains. It is similar to the picture sketched out by the BGI sequencing group when they released their fully analysed DNA data recently — but much easier for most people to understand because of the colourful graphics. One of her graphics is displayed above, but there are more detailed larger scale pixs of the individual chromosomes at her blog.

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This post was syndicated from GMO Pundit. You may comment here or on the original entry.

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Apple Breeding

Do you like Honeycrisp apples, and have you ever wondered what it takes to breed delicious fruits like that? Well in April, UW-Madison was paid a visit by Jim Luby from the University of Minnesota, the apple (and wine grape) breeder who released the Honeycrisp apple. After his seminar, I got a chance to sit down with him and talk about his career in plant breeding – with a camera, of course. I present to you the latest installment of my Fields of Study video series: Apple Breeding with Jim Luby!

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NEWS FLASH: The German EHEC Germ DNA code displays evidence that it has been genetically engineered!

From GMO Pundit.

For a more recent updated post on this topic go here.

Kat Holt, the super-geek pathological-genome breaker at U. Melbourne (who works upstairs from the Pundit, in a room full of expensive computers and a lovely view of sheep) is at it again. She’s found gene rearrangements in the German EAEC outbreak germ. She reports her work in her blog post “ Tn21 resistance transposon in the chromosome?

These gene rearrangement are clearly the result of genetic engineering. The traces of this genetic engineering are right there in the bacteria’s DNA that has just been decoded by the scientists.

Super-computer whiz Kat has found a set of mobile set genes that once lived in another germ of a different species called Salmonella Paratyphi A. They are now neatly and precisely engineered into the main E. coli EHEC chromosome, Kat has discovered.

This discovery is explained by red color-code in the diagram below. The name pAKU1 refers to a mini-chromosome on which they lived when they were found  in the dangerous  Paratyphi germ — which is quite unconnected with the German outbreak. It’s not even an E. coli.

But its genes are in the German E. coli (shown in nice super-female purple). Blue shows genes almost identical to the quite distant African-grandparent of the German germ

Legend to Figure. Kat Holt’s latest discovery about the German EHEC germ. Purple color on the diagram is the BGI Institute data for the German outbreak strain. Blue show DNA code of an African parental strain Ec 55989 from French scientists. Red indicates detection of Paratyphoid like trans-genes in the E. coli genome.

These trans-genes confer resistance to antibiotics streptomycin, trimethoprim, sulfamethoxazole, and the antibacterial metal mercury.

Interestingly, German germ DNA also has a device made of DNA called an integron mentioned by Kat.

Integrons capture genes.

They are used to do genetic engineering.

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This post was syndicated from GMO Pundit. You may comment here or on the original entry.

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